Operationalizing available research computing resources for stock assessment

Nicholas Ducharme-Barth and Megumi Oshima

2024-11-05

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What do we want to do?


Leverage high-throughput or high-performance computing solutions to run stock assessment models

Run more/bigger models in less time

How can we do this?


High-throughput computing (HTC)
High-performance computing (HPC)

Why use HTC/HPC computing?


  • Efficiency

  • Reproducibility

  • Documentation

  • Transparency

  • Automation ?

Workflow

  1. create container
  2. create scripts
  3. transfer files
  4. submit jobs
  5. transfer files back to local machine

National Stock Assessment Science Seminar